Package: SPACO
Title: Spatial Component Analysis for Spatial Sequencing Data
Version: 1.0.3
Authors@R: 
  person("David", "Köhler", , "koehler@imbie.uni-bonn.de", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0006-0027-4046"))
Description: Spatial components offer tools for dimension reduction and
        spatially variable gene detection for high dimensional spatial
        transcriptomics data. Construction of a projection onto
        low-dimensional feature space of spatially dependent metagenes
        offers pre-processing to clustering, testing for spatial
        variability and denoising of spatial expression patterns. For
        more details, see Koehler et al. (2026)
        <doi:10.1093/bioinformatics/btag052>.
Encoding: UTF-8
LinkingTo: Rcpp, RcppEigen
Depends: R (>= 4.2.3)
Imports: ggplot2, Seurat (>= 5.3.0), tibble, ggforce, methods, rARPACK,
        tidyr, mgcv, scales, Matrix (>= 1.5)
License: MIT + file LICENSE
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
NeedsCompilation: yes
Packaged: 2026-10-23 11:38:12 UTC; root
Author: David Köhler [aut, cre] (ORCID:
        <https://orcid.org/0009-0006-0027-4046>)
Maintainer: David Köhler <koehler@imbie.uni-bonn.de>
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev python3 zlib1g-dev
Repository: https://koehlibert.r-universe.dev
Date/Publication: 2026-08-24 11:00:03 UTC
RemoteUrl: https://github.com/cran/SPACO
RemoteRef: HEAD
RemoteSha: eb049ad0d289c987a4b84f61d484fa541f74c9f5